Analytics: Tutorials and Statistical Protocols
Quantitative Trait Locus (QTL) Mapping
qtlTools (package on github) permits quick processing and plotting of R/qtl output. Especially useful for multi-trait or eQTL studies.
Tutorials: |
Gene expression regulation
Conduct analyses of differential gene expression in the R package limma,
view tutorial package is on github |
Plant Physiology
goldy - takes time-series data from a LICOR 6400 and defines the most stable interval, in order to calculate individual scores,
package is on github. |
Constructing Linkage Maps
Several tutorials are available:
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